In the alternate future of X-Men: The End, Wolverine was caring for a crippled Storm and had given up his life as an X-Man. However, after being attacked by a Warskrull, Wolverine and Storm returned to the X-Men only to find a crater where the Mansion had stood. Wolverine, along with Rachel Summers, X-23, and a few others were sent to find out what happened to Cable and his team. Wolverine and Jean Grey/Phoenix met up again. Jean helped Logan break free from the Lady Mastermind and later helped him heal. They were shown as lovers (at least in their minds) and very much in love.