It's unknown entirely what Nick Fury's history is like, but it could be assumed it was similar to his Earth-616 counterpart's (including possibly an encounter with Godzilla) until the revival of the Transformers.
When the Transformers resumed their war while in Oregon, Dum-Dum reported to Nick that they needed to check out what was going on in that area. Fury hoped that it's not Godzilla again, or he'd quit.
Powers and Abilities
Seemingly those of Nicholas Fury (Earth-616)#Powers
- Fury's only line of dialogue to Dum-Dum Dugan is "If that big green, fire-snortin' lizard is loose again, I quit!" Going on the assumption that Transformers originally was supposed to be part of the Marvel Universe (as seen in such things as including a footnote to Amazing Spider-Man #258 or referencing Robbie Robertson's then-recent promotion to Editor-in-Chief in Amazing Spider-Man #251), this can be seen as a reference to Godzilla, who also has a counterpart on Earth-616 and was a problem for his Earth's S.H.I.E.L.D.
- Ironically, Fury's only appearance in Godzilla Vol 1 is in the first issue while it was Dum-Dum who appeared in most of the series, doing most of the work against Godzilla.
- It's unknown what happened to Fury (or even S.H.I.E.L.D.) after this story, as Marvel moved away from making Transformers part of the Marvel Universe.